Nomenclature Server (h25)

This server controls the allelic nomenclature of core genome MLST (cgMLST) bacterial gene schemes. Currently submission of new alleles and optional metadata is only possible by use of the SeqSphere+ software. A cgMLST scheme is a fixed and agreed upon number of genes for each species or group of closely related species that is ideally suited to standardize whole genome sequencing (WGS) based bacterial genotyping. By cgMLST very closely related genomes are 'lumped' together in a Complex Type (CT). In addition, this server controls the allelic nomenclature of the accessory genes of the species seed genomes.

We care about your privacy. Read our privacy policy.

SchemeTarget CountCT Count
Acinetobacter baumannii cgMLST2,3907,064
Bacillus anthracis cgMLST3,803214
Bordetella pertussis cgMLST2,98314
Brucella melitensis cgMLST2,704131
Brucella spp. cgMLST1,764631
Burkholderia mallei (FLI) cgMLST2,83830
Burkholderia mallei (RKI) cgMLST3,32834
Burkholderia pseudomallei cgMLST4,22173
Campylobacter jejuni/coli cgMLST6376,753
Clostridioides difficile cgMLST2,1472,012
Clostridium perfringens cgMLST1,4312
Corynebacterium diphtheriae cgMLST1,553186
Cronobacter sakazakii/malonaticus cgMLST2,83112
Enterococcus faecalis cgMLST1,9723,312
Enterococcus faecium cgMLST1,4238,137
Escherichia coli cgMLST2,51329,469
Francisella tularensis cgMLST1,147226
Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST2,35810,645
Legionella pneumophila cgMLST1,5211,069
Listeria monocytogenes cgMLST1,70119,332
Mycobacterium tuberculosis/bovis/africanum/canettii cgMLST2,89126,076
Mycobacteroides abscessus cgMLST2,904680
Mycoplasma gallisepticum cgMLST42572
Paenibacillus larvae cgMLST2,419192
Pseudomonas aeruginosa cgMLST3,8674,545
Salmonella enterica cgMLST3,00220,259
Serratia marcescens cgMLST2,6921,393
Staphylococcus aureus cgMLST1,86135,070
Staphylococcus capitis cgMLST1,492369
Streptococcus pyogenes cgMLST1,095525
Implemented and maintained by Ridom GmbH, Germany
Privacy Policy       Server Policy       Imprint