cgMLST.org Nomenclature Server (h25)

This server controls the allelic nomenclature of core genome MLST (cgMLST) bacterial gene schemes. Currently submission of new alleles and optional metadata is only possible by use of the Ridom Typer software (formerly known as SeqSphere). A cgMLST scheme is a fixed and agreed upon number of genes for each species or group of closely related species that is ideally suited to standardize whole genome sequencing (WGS) based bacterial genotyping. By cgMLST very closely related genomes are 'lumped' together in a Complex Type (CT). In addition, this server controls the allelic nomenclature of the accessory genes of the species seed genomes.

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SchemeTarget CountCT Count
Acinetobacter baumannii cgMLST2,3908,444
Bacillus anthracis cgMLST3,803225
Bordetella pertussis cgMLST2,983204
Brucella melitensis cgMLST2,704171
Brucella spp. cgMLST1,764660
Burkholderia mallei (FLI) cgMLST2,83830
Burkholderia mallei (RKI) cgMLST3,32834
Burkholderia pseudomallei cgMLST4,221509
Campylobacter jejuni/coli cgMLST63710,106
Citrobacter freundii cgMLST3,250373
Citrobacter freundii/portucalensis/braakii/europaeus cgMLST2,30776
Clostridioides difficile cgMLST2,1478,385
Clostridium perfringens cgMLST1,43184
Corynebacterium diphtheriae cgMLST1,553391
Corynebacterium pseudotuberculosis cgMLST1,57799
Cronobacter sakazakii/malonaticus cgMLST2,831202
Enterobacter hormaechei cgMLST2,178275
Enterococcus faecalis cgMLST1,9724,685
Enterococcus faecium cgMLST1,4239,984
Escherichia coli cgMLST2,51369,159
Francisella tularensis cgMLST1,147239
Klebsiella oxytoca/grimontii/michiganensis/pasteurii cgMLST2,536788
Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST2,35820,432
Legionella pneumophila cgMLST1,5211,766
Listeria monocytogenes cgMLST1,70123,875
Morganella morganii cgMLST2,46216
Mycobacterium tuberculosis/bovis/africanum/canettii cgMLST2,89141,612
Mycobacteroides abscessus cgMLST2,904975
Mycoplasma gallisepticum cgMLST42572
Paenibacillus larvae cgMLST2,419192
Proteus mirabilis cgMLST2,57454
Providencia stuartii cgMLST3,0799
Pseudomonas aeruginosa cgMLST3,8678,348
Salmonella enterica cgMLST3,00231,176
Serratia marcescens cgMLST2,6922,021
Staphylococcus argenteus cgMLST2,1681
Staphylococcus aureus cgMLST1,86149,924
Staphylococcus capitis cgMLST1,492468
Streptococcus pyogenes cgMLST1,0951,375
Yersinia enterocolitica cgMLST2,582806
 
 
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