| Acinetobacter baumannii cgMLST | 2,390 | 8,289 |
| Bacillus anthracis cgMLST | 3,803 | 225 |
| Bordetella pertussis cgMLST | 2,983 | 197 |
| Brucella melitensis cgMLST | 2,704 | 171 |
| Brucella spp. cgMLST | 1,764 | 660 |
| Burkholderia mallei (FLI) cgMLST | 2,838 | 30 |
| Burkholderia mallei (RKI) cgMLST | 3,328 | 34 |
| Burkholderia pseudomallei cgMLST | 4,221 | 493 |
| Campylobacter jejuni/coli cgMLST | 637 | 9,867 |
| Clostridioides difficile cgMLST | 2,147 | 7,383 |
| Clostridium perfringens cgMLST | 1,431 | 81 |
| Corynebacterium diphtheriae cgMLST | 1,553 | 377 |
| Corynebacterium pseudotuberculosis cgMLST | 1,577 | 99 |
| Cronobacter sakazakii/malonaticus cgMLST | 2,831 | 193 |
| Enterobacter hormaechei cgMLST | 2,178 | 234 |
| Enterococcus faecalis cgMLST | 1,972 | 4,436 |
| Enterococcus faecium cgMLST | 1,423 | 9,749 |
| Escherichia coli cgMLST | 2,513 | 66,369 |
| Francisella tularensis cgMLST | 1,147 | 227 |
| Klebsiella oxytoca/grimontii/michiganensis/pasteurii cgMLST | 2,536 | 722 |
| Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST | 2,358 | 19,244 |
| Legionella pneumophila cgMLST | 1,521 | 1,617 |
| Listeria monocytogenes cgMLST | 1,701 | 23,444 |
| Morganella morganii cgMLST | 2,462 | 7 |
| Mycobacterium tuberculosis/bovis/africanum/canettii cgMLST | 2,891 | 40,430 |
| Mycobacteroides abscessus cgMLST | 2,904 | 970 |
| Mycoplasma gallisepticum cgMLST | 425 | 72 |
| Paenibacillus larvae cgMLST | 2,419 | 192 |
| Proteus mirabilis cgMLST | 2,574 | 22 |
| Providencia stuartii cgMLST | 3,079 | 7 |
| Pseudomonas aeruginosa cgMLST | 3,867 | 7,996 |
| Salmonella enterica cgMLST | 3,002 | 30,100 |
| Serratia marcescens cgMLST | 2,692 | 1,910 |
| Staphylococcus argenteus cgMLST | 2,168 | 1 |
| Staphylococcus aureus cgMLST | 1,861 | 48,133 |
| Staphylococcus capitis cgMLST | 1,492 | 435 |
| Streptococcus pyogenes cgMLST | 1,095 | 1,201 |
| Yersinia enterocolitica cgMLST | 2,582 | 780 |