cgMLST.org Nomenclature Server (h25)

This server controls the allelic nomenclature of core genome MLST (cgMLST) bacterial gene schemes. Currently submission of new alleles and optional metadata is only possible by use of the Ridom Typer software (formerly known as SeqSphere). A cgMLST scheme is a fixed and agreed upon number of genes for each species or group of closely related species that is ideally suited to standardize whole genome sequencing (WGS) based bacterial genotyping. By cgMLST very closely related genomes are 'lumped' together in a Complex Type (CT). In addition, this server controls the allelic nomenclature of the accessory genes of the species seed genomes.

We care about your privacy. Read our privacy policy.

SchemeTarget CountCT Count
Acinetobacter baumannii cgMLST2,3908,473
Bacillus anthracis cgMLST3,803225
Bordetella pertussis cgMLST2,983447
Brucella melitensis cgMLST2,704171
Brucella spp. cgMLST1,764661
Burkholderia mallei (FLI) cgMLST2,83830
Burkholderia mallei (RKI) cgMLST3,32834
Burkholderia pseudomallei cgMLST4,221521
Campylobacter jejuni/coli cgMLST63710,324
Citrobacter freundii cgMLST3,250546
Citrobacter freundii/portucalensis/braakii/europaeus cgMLST2,307109
Clostridioides difficile cgMLST2,1479,144
Clostridium perfringens cgMLST1,43184
Corynebacterium diphtheriae cgMLST1,553392
Corynebacterium pseudotuberculosis cgMLST1,57799
Cronobacter sakazakii/malonaticus cgMLST2,831211
Enterobacter hormaechei cgMLST2,178361
Enterococcus faecalis cgMLST1,9724,705
Enterococcus faecium cgMLST1,42310,082
Escherichia coli cgMLST2,51370,072
Francisella tularensis cgMLST1,147240
Klebsiella oxytoca/grimontii/michiganensis/pasteurii cgMLST2,536854
Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST2,35820,766
Legionella pneumophila cgMLST1,5211,807
Listeria monocytogenes cgMLST1,70124,121
Morganella morganii cgMLST2,46219
Mycobacterium tuberculosis/bovis/africanum/canettii cgMLST2,89142,012
Mycobacteroides abscessus cgMLST2,904975
Mycoplasma gallisepticum cgMLST42572
Paenibacillus larvae cgMLST2,419192
Proteus mirabilis cgMLST2,57460
Providencia stuartii cgMLST3,0799
Pseudomonas aeruginosa cgMLST3,8678,477
Salmonella enterica cgMLST3,00231,549
Serratia marcescens cgMLST2,6922,035
Staphylococcus argenteus cgMLST2,1681
Staphylococcus aureus cgMLST1,86152,446
Staphylococcus capitis cgMLST1,492473
Streptococcus pyogenes cgMLST1,0951,394
Yersinia enterocolitica cgMLST2,582812
 
 
Implemented and maintained by Ridom GmbH, Germany
Privacy Policy       Server Policy       Imprint