cgMLST.org Nomenclature Server (h25)

This server controls the allelic nomenclature of core genome MLST (cgMLST) bacterial gene schemes. Currently submission of new alleles and optional metadata is only possible by use of the Ridom Typer software (formerly known as SeqSphere). A cgMLST scheme is a fixed and agreed upon number of genes for each species or group of closely related species that is ideally suited to standardize whole genome sequencing (WGS) based bacterial genotyping. By cgMLST very closely related genomes are 'lumped' together in a Complex Type (CT). In addition, this server controls the allelic nomenclature of the accessory genes of the species seed genomes.

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SchemeTarget CountCT Count
Acinetobacter baumannii cgMLST2,3908,297
Bacillus anthracis cgMLST3,803225
Bordetella pertussis cgMLST2,983202
Brucella melitensis cgMLST2,704171
Brucella spp. cgMLST1,764660
Burkholderia mallei (FLI) cgMLST2,83830
Burkholderia mallei (RKI) cgMLST3,32834
Burkholderia pseudomallei cgMLST4,221493
Campylobacter jejuni/coli cgMLST6379,915
Clostridioides difficile cgMLST2,1477,481
Clostridium perfringens cgMLST1,43181
Corynebacterium diphtheriae cgMLST1,553378
Corynebacterium pseudotuberculosis cgMLST1,57799
Cronobacter sakazakii/malonaticus cgMLST2,831194
Enterobacter hormaechei cgMLST2,178238
Enterococcus faecalis cgMLST1,9724,451
Enterococcus faecium cgMLST1,4239,775
Escherichia coli cgMLST2,51366,728
Francisella tularensis cgMLST1,147231
Klebsiella oxytoca/grimontii/michiganensis/pasteurii cgMLST2,536727
Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST2,35819,629
Legionella pneumophila cgMLST1,5211,636
Listeria monocytogenes cgMLST1,70123,540
Morganella morganii cgMLST2,4627
Mycobacterium tuberculosis/bovis/africanum/canettii cgMLST2,89140,587
Mycobacteroides abscessus cgMLST2,904974
Mycoplasma gallisepticum cgMLST42572
Paenibacillus larvae cgMLST2,419192
Proteus mirabilis cgMLST2,57422
Providencia stuartii cgMLST3,0797
Pseudomonas aeruginosa cgMLST3,8678,037
Salmonella enterica cgMLST3,00230,237
Serratia marcescens cgMLST2,6921,939
Staphylococcus argenteus cgMLST2,1681
Staphylococcus aureus cgMLST1,86148,257
Staphylococcus capitis cgMLST1,492448
Streptococcus pyogenes cgMLST1,0951,203
Yersinia enterocolitica cgMLST2,582780
 
 
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