cgMLST.org Nomenclature Server

This server controls the allelic nomenclature of core genome MLST (cgMLST) bacterial gene schemes. A cgMLST scheme is a fixed and agreed upon number of genes for each species or group of closely related species that is ideally suited to standardize whole genome sequencing (WGS) based bacterial genotyping. By cgMLST very closely related genomes are 'lumped' together in a Cluster Type (CT). In addition, this server controls the allelic nomenclature of the accessory genes of the species reference genomes.

Scheme	Target Count	Strain Count
Acinetobacter baumannii cgMLST	2390	3528
Clostridioides difficile cgMLST	2270	3634
Enterococcus faecium cgMLST	1423	6297
Francisella tularensis cgMLST	1147	32
Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST	2358	3305
Legionella pneumophila cgMLST	1521	552
Listeria monocytogenes cgMLST	1701	15821
Mycobacterium tuberculosis/bovis/africanum/canettii cgMLST	2891	32687
Staphylococcus aureus cgMLST	1861	13618