Nomenclature Server

This server controls the allelic nomenclature of core genome MLST (cgMLST) bacterial gene schemes. A cgMLST scheme is a fixed and agreed upon number of genes for each species or group of closely related species that is ideally suited to standardize whole genome sequencing (WGS) based bacterial genotyping. By cgMLST very closely related genomes are 'lumped' together in a Cluster Type (CT). In addition, this server controls the allelic nomenclature of the accessory genes of the species reference genomes.

SchemeTarget CountStrain Count
Enterococcus faecium cgMLST14235017
Francisella tularensis cgMLST114732
Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST23582682
Legionella pneumophila cgMLST1521426
Listeria monocytogenes cgMLST170112980
Mycobacterium tuberculosis complex cgMLST289131914
Staphylococcus aureus cgMLST186112331
Implemented and maintained by Ridom GmbH, Germany